docs: the 12 duplicates deleted; README rewritten to the system as it is

Captain Bob's rulings, 2026-10-14: "delete" -- the duplicates listed in
DELETE-CANDIDATES.md are removed (the list stays as the record; the
formal tier's provenance comments repointed at the maintained copies) --
and "rewrite" the README: v2.1.0, the Tripod as Hera/Artemis/Hestia,
kernel-Hermes, identities on thumbdrives, the corrected ACL overhead,
1052-test POST and the current parity line, keyboards and storage, board
images carrying both systems and how to switch, and docs/README.md as
the way in.  The book is left as it is, to be reworked later.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

docs/formal/cookbook/main.tex

@@ -100,7 +100,7 @@
 \part{Security and ACL Recipes}
 
 \chapter{Word-Level ACL Basics}
-%% SOURCE: docs/working/architecture/03-architecture/word-acl/DESIGN.md
+%% SOURCE: docs/reference/word-acl/DESIGN.md
 %% TODO(bob): promote ACL recipe: loading ACL.4th, granting/revoking modes,
 %% TTL-based expiry. Do NOT draft independent claim language.
 \input{../scraps/architecture/03-architecture/word-acl/DESIGN}

docs/formal/scraps/architecture/03-architecture/word-acl/DESIGN.tex

@@ -1,5 +1,5 @@
 %% SCRAP: architecture/03-architecture/word-acl/DESIGN
-%% SOURCE: docs/working/architecture/03-architecture/word-acl/DESIGN.md
+%% SOURCE: docs/reference/word-acl/DESIGN.md
 %% STATUS: CURRENT
 %% FITS: dev-guide/ch-acl, cookbook/ch-acl
 %% EDITORIAL: lifted — prose rewritten to press voice

docs/formal/scraps/papers/ONTOLOGY.tex

@@ -1,5 +1,5 @@
 %% SCRAP: papers/ONTOLOGY
-%% SOURCE: docs/working/papers/ONTOLOGY.md
+%% SOURCE: docs/reference/ONTOLOGY.md
 %% STATUS: CURRENT
 %% FITS: ssrn/ch-ontology, vol3-research/ch-ontology
 %% EDITORIAL: lifted — prose rewritten to press voice; thermodynamic-as-metaphor framing preserved throughout

docs/formal/ssrn/main.tex

@@ -2,7 +2,7 @@
 %% SOURCE: docs/working/papers/published/James_Steady-State_Convergence_Adaptive_Runtime.pdf
 %%         docs/working/papers/SSRN_companion/Math_Companion_SSRN.tex
 %%         docs/working/papers/FORMAL_CLAIM_TABLE.md
-%%         docs/working/papers/ONTOLOGY.md
+%%         docs/reference/ONTOLOGY.md
 %% NOTE: The SSRN paper itself is a published PDF — it is NOT re-typeset here.
 %%       This volume collects the companion material: Math Companion (full LaTeX),
 %%       formal claim tables, ontology, and academic wording guidelines.
@@ -84,7 +84,7 @@ The canonical paper PDF is at:
 \part{Ontology of Terms}
 
 \chapter{Thermodynamic Metaphor Ontology}
-%% SOURCE: docs/working/papers/ONTOLOGY.md
+%% SOURCE: docs/reference/ONTOLOGY.md
 %% NOTE: Thermodynamic terms are modeling tools, not physics claims.
 %% Always introduce with domain qualifier: "using X as a proxy for Y, …"
 \input{../scraps/papers/ONTOLOGY}

docs/formal/vol2-kernel/ch03-acl-security.tex

@@ -1,5 +1,5 @@
 %% Vol II, Chapter 3 — ACL and Security Model
-%% SOURCE: docs/working/architecture/03-architecture/word-acl/DESIGN.md
+%% SOURCE: docs/reference/word-acl/DESIGN.md
 %%         .claude/CLAUDE.md (Word-Level ACL System section)
 %%         capsules/ACL.4th, capsules/zuse.4th
 
@@ -19,7 +19,7 @@
 \section{Two-Console Model}
 \label{vol2:sec:acl:consoles}
 
-%% SOURCE: docs/working/architecture/03-architecture/word-acl/DESIGN.md
+%% SOURCE: docs/reference/word-acl/DESIGN.md
 %% TODO(bob): describe the two permanent console layers:
 %%   - emergency console (ok>) — fault handler active
 %%   - zuse console (zuse)ok>) — superuser authenticated

docs/formal/vol3-research/ch06-ontology.tex

@@ -1,5 +1,5 @@
 %% Vol III, Chapter 6 — Ontology of Thermodynamic Terms
-%% SOURCE: docs/working/papers/ONTOLOGY.md
+%% SOURCE: docs/reference/ONTOLOGY.md
 %%         docs/working/papers/ONTOLOGY_README.md
 
 \chapter{Ontology of Thermodynamic Terms}