Files

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rajamesandClaude Opus 5.5 7aed588f78 docs: reorganise -- current reference gathered, finished work archived, superseded and dead ideas marked as such

docs/CLAUDE.md Phase 2, 2026-10-14.  All moves by git mv; every archived
file carries a header saying what it is, why, and where to look instead.

- docs/reference/ (new): roadmap and versioning policy, M7.1, word-ACL
  design, kernel args, hosted acceptance test, dictionary, primitives,
  ontology, L8 table -- previously spread over docs/, docs/lithosananke/
  and docs/03-architecture/.
- docs/working/archive/historical/: finished work (session plan, test-gap
  audit, birthing plan, fix write-ups, the January architecture draft).
- docs/working/archive/superseded/: the Hermes-VM Tripod docs and July
  Hermes designs (-> FABRIC-3.5/3.6), the StarForth roadmap, every working
  doc already flagged superseded or obsolete.
- docs/working/archive/dead/: the hal_* target contract (never adopted),
  L4Re, metrics-and-knobs.
- Papers and proposals into docs/working/papers/.
- References rewritten across the repo (not logs/, not docs/patent/);
  CLAUDE.md's documentation section rewritten.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

2026-10-14 16:03:56 -04:00

architecture

docs: reorganise -- current reference gathered, finished work archived, superseded and dead ideas marked as such

2026-10-14 16:03:56 -04:00

README.md

docs/working/ — Living Documentation

Source material for the formal documentation tier. Design notes, DoE logs, architecture decisions, experiment reports, draft specs — everything not yet promoted to docs/formal/. See docs/CLAUDE.md for the two-tier model.

Layout

Directory	Contents
`architecture/`	System design: physics engine, HAL, heartbeat, pipelining, word-ACL, adaptive systems, getting-started, plus dated design/finding notes for Artemis, Hermes, and the K-PUSH dictionary-shadowing bug. (`03-architecture/`, `getting-started/`, `heartbeat_csv_export.md`)
`experiments/`	DoE designs and run data. (`02-experiments/`, `campaigns/` = former top-level `experiments/`, including the `l8_attractor_map`, `l8_validation`, `doe_2x7`, `shape_validation`, and `window_scaling` campaigns)
`specifications/`	Protocol/format specs — currently `HOLA_PROTOCOL.adoc`.
`hardware/`	Board bring-up, platform/perf notes — `PGO_GUIDE.adoc`, `PLATFORM_BUILD_GUIDE.adoc`, plus `performance-profiling/` and `platform-integration/` subtrees.
`legal/`	Patent-adjacent material — HOLD. See `legal/README.md`. Nothing moved here without Bob's instruction.
`papers/`	Academic / citable writing: claim tables, anti-claims, null hypothesis, reproducibility, ontology (markdown), SSRN companion (`SSRN_companion/`), `FINAL_REPORT/`, published SSRN PDF (`published/`).
`scratch/`	Uncategorized working material: governance/meta docs (`governance/`, `ci-cd/`, `testing-quality/`), the full `docs/src/` developer-reference tree (`src/`), asset holding area (`assets/`).
`archive/`	Historical / superseded / obsolete records: quality audits, operations, research drafts, session logs, the former `docs/archive/` tree (`legacy/`), artifacts.

Phase 2 reorganization notes (2026-06-16)

Moves used git mv (history preserved). Each moved .md/.adoc/.tex file carries a one-line provenance header noting its original path.
Reorg used directory-level consolidation rather than splitting every mixed-tag directory file-by-file, to keep companion data (logs, CSVs, randomization matrices) with the reports they belong to. Per-file status tags remain authoritative in docs/INDEX.md.
docs/src/ landed under scratch/src/ as a holding area — it is mixed developer reference that still needs semantic re-filing into architecture/, hardware/, and specifications/.
Repo-root convention files (README.md, ROADMAP.md, ONTOLOGY.md, CONTRIBUTING.md, CODE_OF_CONDUCT.md, NOTICE.md) and the docs landing files (docs/CLAUDE.md, docs/INDEX.md, docs/README.md) were left in place.
DELETE candidates: see docs/DELETE-CANDIDATES.md (nothing deleted).