rajamesandClaude Opus 5.5
2e71f7aa0d
The increment 2 final review's minors 1-4 (Captain Bob, 2026-10-27: "fix 1-4"): 1. A protective MBR with no "EFI PART" header is GPT_BAD, not GPT_NONE: the MBR says it is a GPT disk, and a GPT disk is never attached whole. 2. A disk whose block 0 cannot be read is GPT_EIO: "GPT: a USB drive could not be read -- not used", nothing attached (it was read raw, attached whole, and a raw Zuse drive behind it logged her in). 3. The entry array's LBA is checked against the disk's size directly. 4. gpt_bad_entries: the entry array changed, the header valid -- refused. Harness modes gpt_no_header, gpt_read_error (blkdebug EIO on sector 0), gpt_bad_entries. The plan carries the amendment. Red (amd64): gpt_no_header 070335, gpt_read_error 070717 FAIL; gpt_bad_entries 070048 PASS (existing check, now pinned). Green: every GPT mode on amd64 071113-072933; gpt_zuse, gpt_read_error, gpt_no_header on aarch64 073222-074047 and riscv64 074526-075535; the identity gate's and increment 1's sessions 080036-082345, emergency 083130 (082635 was run without EMERGENCY_CONSOLE_ENABLED=1 -- a harness invocation error). Accepted: suite EXIT 0; 093121, 093352, 093750, POST 538/538, dict_hash 0xfec8c47cfc6f437f; test-32, 0 failures. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
scripts/
Utility scripts for building, profiling, DoE experiments, and documentation.
DoE / experiment scripts
| Script | Purpose |
|---|---|
run_doe.sh |
Run a standard DoE experiment |
run_factorial_doe.sh |
2^7 factorial DoE |
run_factorial_doe_with_heartbeat.sh |
Factorial DoE with heartbeat metrics |
run_nested_doe.sh |
Nested DoE design |
run_ablation_study.sh |
Physics loop ablation |
run_optimization_doe.sh |
Optimization-focused DoE |
run_quick_doe_test.sh |
Quick smoke-check DoE (1 rep) |
extract_doe.sh |
Extract CSV rows from QEMU serial logs |
Build / profile scripts
| Script | Purpose |
|---|---|
perf-profile.sh |
Linux perf profiling harness |
perf-profile_control.sh |
Control run for perf comparison |
rundisk.sh |
Boot a disk image in QEMU |
qemu_screenshot.sh |
Capture QEMU serial output |
Phase 8 / identity testing scripts
| Script | Purpose |
|---|---|
bleach_zuse_img.sh |
Reset disk/zuse.img back to pristine/unminted (blank) state, for repeatable first-boot mint-flow testing |
FORTH capsule scripts
| Script | Purpose |
|---|---|
4th-apply-init.sh |
Apply init.4th patches to capsule set |
4th-update-init.sh |
Update init.4th across capsule variants |
Documentation scripts
| Script | Purpose |
|---|---|
asciidoc-to-latex.sh |
Convert AsciiDoc to LaTeX |
convert-markdown-to-asciidoc.sh |
Markdown → AsciiDoc |
doxygen-xml-to-asciidoc.py |
Doxygen XML → AsciiDoc |
generate-doxygen-appendix.sh |
Build Doxygen API appendix |
build_patent_structure.sh |
Scaffold patent document structure |
setup-ide-integration.sh |
Configure IDE integration |
analyze_heartbeat_stability.R |
R analysis of heartbeat stability data |
analyze_opp2_regression.py |
Python regression analysis |
gen_pe_reloc.py |
PE relocation table generator (see also tools/) |
remove_loop_conditionals.sh |
Remove loop conditional guards |
See also
experiments/bare_metal/README.md— DoE protocols- Project root