Closes the "still open" reader-tool note from §XXXV.10: scripts/ extract_doe_region.py spools DOE-PERSIST-TRIAL's on-disk binary ring off disk/artemis.img into a CSV -- direct file read by default, or via a real loop device (--loop, losetup) per the literal request. Independent Python reimplementation of doe_region.c's own ring-walk, verified against a live 3-record write/read round trip. analyse_multiuser_doe.R (house style, ggplot2/svglite) and multiuser_doe_report.tex (same preamble convention as bare_metal_doe_report.tex) auto-discover whatever data exists and degrade gracefully to a placeholder when a campaign has 0 trials so far -- the whole point being this can be rebuilt at any point during a multi-day campaign, including mid-run. build_multiuser_doe_report.sh chains extraction -> R -> svg_to_pdf.py -> pdflatex into one command. Found and fixed a real bug while verifying: the R script's SCRIPT_DIR detection silently wrote charts/tables/report output to the repo root instead of the analysis directory when invoked from a different cwd -- switched to the robust commandArgs() "--file=" idiom. Verified live both branches (0 trials and a real 3-record write), reverted synthetic test data and incidental svg_to_pdf.py churn on ~85 unrelated committed figures before committing. FABRIC-3.md §XXXV.11 has the full account. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01BWpNjdwPtFLuVLaAq44L9K
195 lines
7.7 KiB
Python
Executable File
195 lines
7.7 KiB
Python
Executable File
#!/usr/bin/env python3
|
|
"""
|
|
extract_doe_region.py -- spool the DOE-PERSIST-TRIAL binary ring off
|
|
disk/artemis.img into a CSV, for the multiuser/multitasking DoE campaign
|
|
report (FABRIC-3.md §XXXV.10).
|
|
|
|
Reads the SAME devblock_from_top-addressed ring doe_region.c writes
|
|
(include/starkernel/doe_region.h has the authoritative layout: control
|
|
header at devblock_from_top=98, slot devblocks growable from 99, 64-byte
|
|
doe_trial_slot_t records, 64 slots/devblock). Two access modes:
|
|
|
|
--img PATH Read the image file directly (default). No privilege
|
|
needed, works on a plain regular file. This is what
|
|
"reading the drive" reduces to when the image is
|
|
just a file, which is the normal QEMU-dev case.
|
|
|
|
--loop PATH Attach PATH via losetup first (needs sudo), read the
|
|
resulting /dev/loopN node, then detach it again on
|
|
exit -- the literal "mount the virtual drive on a
|
|
loop device" step for when this runs against a real
|
|
block device or a copy pulled off real hardware. The
|
|
ring is raw binary at a fixed byte offset, not a
|
|
filesystem -- there is nothing to `mount` in the
|
|
POSIX-filesystem sense, so this attaches the loop
|
|
device and reads it exactly like a regular file.
|
|
|
|
Either mode is read-only and never modifies the image. Safe to run
|
|
against a live campaign's artemis.img (the ring's control header CRC
|
|
means a torn read mid-write is simply rejected as "ring not yet
|
|
initialized" by the same discipline doe_region.c itself uses -- see
|
|
doe_region_ctrl_read()); worst case is missing the very latest record
|
|
until the next run of this script.
|
|
"""
|
|
|
|
import argparse
|
|
import csv
|
|
import struct
|
|
import subprocess
|
|
import sys
|
|
from contextlib import contextmanager
|
|
from pathlib import Path
|
|
|
|
DEVBLOCK_SIZE = 4096
|
|
|
|
# Mirrors include/starkernel/doe_region.h and include/starkernel/log_region.h
|
|
ARTEMIS_SIG_DEVBLOCK_FROM_TOP = 64
|
|
LOG_REGION_DEVBLOCK_FROM_TOP_BASE = ARTEMIS_SIG_DEVBLOCK_FROM_TOP + 1 # 65
|
|
LOG_REGION_MAX_DEVBLOCKS = 32
|
|
DOE_REGION_DEVBLOCK_FROM_TOP_BASE = (
|
|
LOG_REGION_DEVBLOCK_FROM_TOP_BASE + 1 + LOG_REGION_MAX_DEVBLOCKS
|
|
) # 98
|
|
|
|
DOE_SLOT_SIZE = 64
|
|
DOE_SLOTS_PER_DEVBLOCK = DEVBLOCK_SIZE // DOE_SLOT_SIZE # 64
|
|
DOE_REGION_MAGIC = 0x44454F44 # 'DOED'
|
|
DOE_REGION_VERSION_0 = 0
|
|
|
|
# doe_region_ctrl_t: magic(u64) devblocks(u32) head_slot(u32) tail_slot(u32)
|
|
# record_count(u32) hdr_crc(u64), little-endian, rest is padding to 4096.
|
|
CTRL_FMT = "<QIIIIQ"
|
|
CTRL_SIZE = struct.calcsize(CTRL_FMT)
|
|
|
|
# doe_trial_slot_t: fleet_k_q48(u64) switch_count_cumulative(u64)
|
|
# run_id(u32) cfg(u32) rep(u32) nw(u32) mode(u32) fail_count(u32)
|
|
# fleet_conserved(u32) isa(8s), rest is padding to 64.
|
|
SLOT_FMT = "<QQIIIIIII8s"
|
|
SLOT_SIZE = struct.calcsize(SLOT_FMT)
|
|
assert SLOT_SIZE <= DOE_SLOT_SIZE
|
|
|
|
|
|
def dft_to_offset(devblock_from_top: int, total_devblocks: int) -> int:
|
|
idx = total_devblocks - 1 - devblock_from_top
|
|
if idx < 0:
|
|
raise ValueError(
|
|
f"devblock_from_top={devblock_from_top} exceeds total_devblocks={total_devblocks}"
|
|
)
|
|
return idx * DEVBLOCK_SIZE
|
|
|
|
|
|
@contextmanager
|
|
def loop_attach(img_path: Path):
|
|
"""Attach img_path via losetup (read-only), yield the /dev/loopN path,
|
|
detach on exit. Requires sudo -- the literal 'mount on a loop device'
|
|
step; nothing here is a filesystem mount."""
|
|
result = subprocess.run(
|
|
["sudo", "losetup", "--find", "--show", "--read-only", str(img_path)],
|
|
capture_output=True, text=True, check=True,
|
|
)
|
|
loop_dev = result.stdout.strip()
|
|
print(f" attached {img_path} -> {loop_dev}", file=sys.stderr)
|
|
try:
|
|
yield loop_dev
|
|
finally:
|
|
subprocess.run(["sudo", "losetup", "--detach", loop_dev], check=False)
|
|
print(f" detached {loop_dev}", file=sys.stderr)
|
|
|
|
|
|
def read_ring(dev_path: str):
|
|
"""Returns a list of dicts, one per live trial record, in ring order
|
|
(oldest first). Empty list if the ring has never been written."""
|
|
size = Path(dev_path).stat().st_size if not dev_path.startswith("/dev/") else None
|
|
if size is None:
|
|
with open(dev_path, "rb") as f:
|
|
f.seek(0, 2)
|
|
size = f.tell()
|
|
|
|
total_devblocks = size // DEVBLOCK_SIZE
|
|
if total_devblocks <= DOE_REGION_DEVBLOCK_FROM_TOP_BASE:
|
|
raise ValueError(
|
|
f"image too small ({size} bytes, {total_devblocks} devblocks) "
|
|
f"for the DOE region fence (needs > {DOE_REGION_DEVBLOCK_FROM_TOP_BASE})"
|
|
)
|
|
|
|
ctrl_off = dft_to_offset(DOE_REGION_DEVBLOCK_FROM_TOP_BASE, total_devblocks)
|
|
with open(dev_path, "rb") as f:
|
|
f.seek(ctrl_off)
|
|
ctrl_raw = f.read(DEVBLOCK_SIZE)
|
|
|
|
magic, devblocks, head_slot, tail_slot, record_count, hdr_crc = struct.unpack_from(
|
|
CTRL_FMT, ctrl_raw, 0
|
|
)
|
|
magic_lo = magic & 0xFFFFFFFF
|
|
version = (magic >> 32) & 0xFF
|
|
if magic_lo != DOE_REGION_MAGIC or version != DOE_REGION_VERSION_0:
|
|
print(" DOE region not yet initialized (no trials persisted yet)", file=sys.stderr)
|
|
return []
|
|
|
|
total_slots = devblocks * DOE_SLOTS_PER_DEVBLOCK
|
|
records = []
|
|
with open(dev_path, "rb") as f:
|
|
idx = head_slot
|
|
for _ in range(record_count):
|
|
slot_devblock_dft = DOE_REGION_DEVBLOCK_FROM_TOP_BASE + 1 + (idx // DOE_SLOTS_PER_DEVBLOCK)
|
|
slot_off_in_devblock = (idx % DOE_SLOTS_PER_DEVBLOCK) * DOE_SLOT_SIZE
|
|
blk_off = dft_to_offset(slot_devblock_dft, total_devblocks)
|
|
f.seek(blk_off + slot_off_in_devblock)
|
|
raw = f.read(SLOT_SIZE)
|
|
(fleet_k_q48, switch_count, run_id, cfg, rep, nw, mode,
|
|
fail_count, fleet_conserved, isa_raw) = struct.unpack(SLOT_FMT, raw)
|
|
isa = isa_raw.split(b"\x00", 1)[0].decode("ascii", errors="replace")
|
|
records.append({
|
|
"isa": isa,
|
|
"run_id": run_id,
|
|
"cfg": cfg,
|
|
"rep": rep,
|
|
"nw": nw,
|
|
"mode": mode,
|
|
"fail_count": fail_count,
|
|
"fleet_k_q48": fleet_k_q48,
|
|
"fleet_conserved": fleet_conserved,
|
|
"switch_count_cumulative": switch_count,
|
|
})
|
|
idx = (idx + 1) % total_slots
|
|
|
|
print(f" ring: devblocks={devblocks} head={head_slot} tail={tail_slot} "
|
|
f"record_count={record_count} -> {len(records)} records read", file=sys.stderr)
|
|
return records
|
|
|
|
|
|
def main():
|
|
ap = argparse.ArgumentParser(description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)
|
|
ap.add_argument("--img", default="disk/artemis.img", help="Path to the disk image (default: disk/artemis.img)")
|
|
ap.add_argument("--loop", action="store_true", help="Attach --img via losetup first (needs sudo)")
|
|
ap.add_argument("-o", "--out", default=None, help="Output CSV path (default: stdout)")
|
|
args = ap.parse_args()
|
|
|
|
img_path = Path(args.img)
|
|
if not img_path.exists():
|
|
print(f"extract_doe_region: image not found: {img_path}", file=sys.stderr)
|
|
sys.exit(1)
|
|
|
|
if args.loop:
|
|
with loop_attach(img_path) as loop_dev:
|
|
records = read_ring(loop_dev)
|
|
else:
|
|
records = read_ring(str(img_path))
|
|
|
|
fieldnames = ["isa", "run_id", "cfg", "rep", "nw", "mode", "fail_count",
|
|
"fleet_k_q48", "fleet_conserved", "switch_count_cumulative"]
|
|
|
|
out_f = open(args.out, "w", newline="") if args.out else sys.stdout
|
|
try:
|
|
writer = csv.DictWriter(out_f, fieldnames=fieldnames)
|
|
writer.writeheader()
|
|
for rec in records:
|
|
writer.writerow(rec)
|
|
finally:
|
|
if args.out:
|
|
out_f.close()
|
|
print(f" wrote {len(records)} rows -> {args.out}", file=sys.stderr)
|
|
|
|
|
|
if __name__ == "__main__":
|
|
main()
|